Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015828652.1_cds_XP_016503467.1_17010
CDS Infomation

[gene=LOC107821555] [db_xref=GeneID:107821555] [protein=tetratricopeptide repeat protein 5-like] [protein_id=XP_016503467.1] [location=complement(join(123070..123189,123797..123868,124562..124631,124740..124854,124952..125042,129237..129374,129735..129788,129961..130055,130964..131053,131170..131239,131342..131452,131536..131645,132020..132212))] [gbkey=CDS]
Sequence

ATGAGCAGTTCTGCAGGAGGAGCTAGCGGAGGAGACGCCGGAGAAGAGAATGTGTTTTCA
GAGGTGATTGAATTCGCTAAAACAATCGATGATTTTCGCAATCACTATTTCCTCCCAAGT
CGTCAGGAAAAAATGGCTATACTGAAAGAGCAAGCTGATCGTGCTATCCAATTACTCGAC
GCTATCCCTAAAGAGAAGCGGCAATCGCAGGAGGATGATGCGATGTATTTGTACTTGAGA
GGGAAGTTTCTGGATGTGTCTCCTGGTTATAATAAGGAAGCAGAGCAAAGTTTAACAGAA
GCTCTTCAGTTGAATCGTTATATGGTGGATGCGTGGATATGCTTAGGAACTTGTGTTTGG
AAACGAGGAGATCTTGATAAAGCTAAAAGTTGCTTTAAACTTGGCCTTGAACAGGATCCG
AAAAATTTGGAGCTATTACGTCAATTATCTGTGCTCGAAAGAAGACAGTGCACTGGTGAA
ATAGAGGTTGAAGATCCAGAAGAAATCATTGCTGAAAGTATTAAGCATGCCAAGGAAGCA
ATTGCTCTGGATATCCGGGATGGAATATCGTGGTATGCCCTAGGAAATGCATGTCTCACT
GCCTATTTTCTGACTGGAACTTGGGATCATGATATGCTTTTTCAGTCATTAAAAGCATAC
AAGAATGCTGCGAAAGACCAAAAGATGATGCGCAGTGCTGAATTGTGTTTCAACTGCTCG
ATGACGTACAAGTTTCTGGAGAACTATTGGATGGCCCTATCTGGATTTGAAAGTGCTGGA
TTATTGGATCCTAGTCTTAAAGCTATAGAGCAAGCATCAAATCTGTGCGATGTTCTTGAT
GATATAGACTCTTTGCTTAAGAAACTGAATGATGCTAAGCAGCTTTCTTCTCCAACATCA
TCATCCCTTCCTACTGTTGATTCGCTAGCATCATCACTTGCTTCTGTTGAATTGGATCCT
TCATATGAGAGAGCTACTGTCGATCGCCTAACTGAAGGTCTTAATGAAGGAAAAGCAGTC
ACAGGAAAAGTTCTGTTTTCAGTTAAGAATCCGAGCAAAAGACCAATATACTATGTCGTC
TGTGATTCTGACCGCACATGCTTTGTAATTACTGTTTACGGAGTACGGGGCACTGCAATC
AAAGAAGAAGATCAGATCACACTTTTGGATCCTTTCTATCATTCCTTTGATTTTGAATGG
AAATTAAAGCGATATCAGTTCAAGTCAGTGCGAGTGGATTTTCTGCGACAACTTCGTGTT
AACGGTGCAATTGTCTCGCCTCAACATGTAATTCATCGGTCAATGTACGCCGACCTCATG
AAAGGATAA

Peptide Sequence

PEP ID

XP_016503467.1
PEP Infomation

PREDICTED: tetratricopeptide repeat protein 5-like [Nicotiana tabacum]
Sequence

MSSSAGGASGGDAGEENVFSEVIEFAKTIDDFRNHYFLPSRQEKMAILKEQADRAIQLLD
AIPKEKRQSQEDDAMYLYLRGKFLDVSPGYNKEAEQSLTEALQLNRYMVDAWICLGTCVW
KRGDLDKAKSCFKLGLEQDPKNLELLRQLSVLERRQCTGEIEVEDPEEIIAESIKHAKEA
IALDIRDGISWYALGNACLTAYFLTGTWDHDMLFQSLKAYKNAAKDQKMMRSAELCFNCS
MTYKFLENYWMALSGFESAGLLDPSLKAIEQASNLCDVLDDIDSLLKKLNDAKQLSSPTS
SSLPTVDSLASSLASVELDPSYERATVDRLTEGLNEGKAVTGKVLFSVKNPSKRPIYYVV
CDSDRTCFVITVYGVRGTAIKEEDQITLLDPFYHSFDFEWKLKRYQFKSVRVDFLRQLRV
NGAIVSPQHVIHRSMYADLMKG

Transcript Sequence

Gene sequence data has not been registered.